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Displaying 55 publication(s).
 

 
Title Author(s) Year Journal PMCID/PMID/DOI
Mapping the Human Connectome Toga, Arthur W. PhD; Clark, Kristi A. PhD; Thompson, Paul M. PhD; Shattuck, David W. PhD; Van Horn, John Darrell PhD 2012 Neurosurgery DOI: 10.1227/NEU.0b013e318258e9ff
3D Elastic Registration Improves HARDI-Derived Fiber Alignment and Automated Tract Clustering Y. Jin, Y. Shi, N. Jahanshad, I. Aganj, G. Sapiro, A.W. Toga, P.M. Thompson 2011 ISBI DOI: 10.1109/ISBI.2011.5872531
Automated Corpus Callosum Extraction via Laplace-Beltrami Nodal Parcellation and Intrinsic Geodesic Curvature Flows on Surfaces R. Lai, Y. Shi, N. Sicotte, A. Toga 2011 ICCV
Automated hippocampal shape analysis predicts the onset of dementia in Mild Cognitive Impairment S. G. Costafreda , I. Dinov, Z. Tu, Y. Shi , C. Liu, I. Klowzewska, P. Mecocci, H. Soininen, M. Tsolaki, B. Vellas, L. Walhund, C. Spenger, A. W. Toga, S. Lovestone, A. Simmons 2011 NeuroImage, 56(1), pp:212-219 DOI: 10.1016/j.neuroimage.2011.01.050
Automated probabilistic reconstruction of white-matter pathways in health and disease using an atlas of the underlying anatomy Yendiki A, Panneck P, Srinivasan P, Stevens A, Zöllei L, Augustinack J, Wang R, Salat D, Ehrlich S, Behrens T, Jbabdi S, Gollub R and Fischl B 2011 Frontiers in Neuroinformatics 5:23 DOI: 10.3389/fninf.2011.00023
Conformal Metric Optimization on Surface (CMOS) for Deformation and Mapping in Laplace-Beltrami Embedding Space Y. Shi, R. Lai, R. Gill, D. Pelletier, D. Mohr, N. Sicotte, A. W. Toga 2011 MICCAI
CoRPORATE: Cortical Reconstruction by Pruning Outliers with Reeb Analysis and Topology-preserving Evolution Y. Shi, R. Lai, A. W. Toga 2011 IPMI
Differential Information Content in Staggered Multiple Shell HARDI Measured by the Tensor Distribution Function Zhan L, Leow AD, Aganj I, Lenglet C, Sapiro G, Yacoub E, Harel N, Toga AW, Thompson PM 2011 ISBI DOI: 10.1109/ISBI.2011.5872411
Heritability of White Matter Fiber Tract Shapes: A HARDI Study of 198 Twins Yan Jin, Yonggang Shi, Shantanu Joshi ,Neda Jahanshad, Zhan Liang, Greig de Zubicaray, Katie McMahon, Nicholas Martin, Margaret Wright, Arthur Toga, Paul Thompson 2011 MBIA in conjunction with MICCAI; September 18-22 DOI: 10.1007/978-3-642-24446-9_5
K-SVD for HARDI Denoising V. Patel, Y. Shi, P.M. Thompson, A. W. Toga 2011 ISBI DOI: 10.1109/ISBI.2011.5872757
Probabilistic Tractography using the Tensor Distribution Function in Multiple-Shell HARDI Zhan L, J.J. GadElkarim, A.D. Leow, I. Aganj, C. Lenglet, G. Sapiro, N. Harel, Toga AW, Thompson PM 2011 Organization for Human Brain Mapping, Quebec City, Canada DOI: 10.1109/ISBI.2011.5872529
Quality assessment of high angular resolution diffusion imaging data using bootstrap on Q-ball reconstruction. Cohen-Adad J, Descoteaux M, Wald LL. 2011 J Magn Reson Imaging. 2011 May; vol. 33, issue 5, pp. 1194-208. Epub 2011 April 20. DOI: 10.1002/jmri.22535
The Organization of the Human Cerebral Cortex Estimated By Functional Connectivity Yeo BT, Krienen FM, Sepulcre J, Sabuncu MR, Lashkari D, Hollinshead M, Roffman JL, Smoller JW, Zollei L, Polimeni JR, Fischl B, Liu H, Buckner RL 2011 J Neurophysiol. 2011 Jun 8 PMID: 21653723
Verbal IQ correlates more strongly with white matter integrity in HARDI after multi-fiber demixing Zhan L, N. Jahanshad, A.D. Leow, A.W. Toga, K. L. McMahon, G. I. de Zubicaray, N.G. Martin, M. J. Wright, Thompson PM 2011 Organization for Human Brain Mapping, Quebec City, Canada
A Computational Model of Multidimensional Shape Xiuwen Liu, Yonggang Shi, Ivo Dinov, Washington Mio 2010 International Journal of Computer Vision - IJCV , vol. 89, no. 1, pp. 69-83 DOI: 10.1007/s11263-010-0323-0
Automated Sulci Identification via Intrinsic Modeling of Cortical Anatomy Y. Shi, B. Sun, R.Lai, I.Dinov, A.W.Toga 2010 MICCAI PMCID: PMC2970518
Bayesian Approach for Network Modeling of Brain Structural Features Anand A. Joshi, Shantanu H. Joshi, Richard M. Leahy, David W. Shattuck, Ivo Dinov, Arthur W. Toga 2010 Proceedings of the SPIE, Volume 7626, pp. 762607-762607-8 (2010). DOI: 10.1117/12.844548
BDNF Effects on Brain Fiber Microstructure Replicated in Two Twin Samples (N=455) Ming-Chang Chiang, Marina Barysheva, Arthur Toga, Narelle Hansell, Michael James, Katie McMahon, Greig de Zubicaray, Nicholas Martin, Margaret Wright, Paul Thompson 2010 Organization for Human Brain Mapping, Barcelona, Spain; 2010.
Developing Neocortex Organization and Connectivity in Cats Revealed by Direct Correlation of Diffusion Tractography and Histology Takahashi E, Dai G, Rosen GD, Wang R, Ohki K, Folkerth RD, Galaburda AM, Wedeen VJ, Grant PE 2010 Cereb Cortex. 2010 May 21. PMID: 20494968
Development of Cerebral Fiber Pathways in Cats Revealed by Diffusion Spectrum Imaging Takahashi E, Dai G, Wang R, Ohki K, Rosen GD, Galaburda AM, Grant PE, Wedeen VJ 2010 Neuroimage. 2010 Jan 15;49(2):1231-40. Epub 2009 Sep 8. PMID: 19747553
Differential Information Content in Multiple Shell HARDI Measured by the Tensor Distribution Function Liang Zhan, Alex D. Leow, Iman Aganj, Christophe Lenglet, Guillermo Sapiro, Noam Harel, Arthur W. Toga, Paul M. Thompson 2010 13th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), Beijing, China, September 20-24 (2010).
Diffusion Tensor Imaging in Seven Minutes: Determining Trade-offs Between Spatial and Directional Resolution Neda Jahanshad, Liang Zhan, Matt A. Bernstein, Bret J. Borowski, Clifford R. Jack Jr., Arthur W. Toga, Paul M. Thompson 2010 2010 IEEE International Symposium on Biomedical Imaging From Nano to Macro (2010) DOI: 10.1109/ISBI.2010.5490200
Direct visualization of the perforant pathway in the human brain with ex vivo diffusion tensor imaging Jean C. Augustinack1, Karl Helmer, Kristen E. Huber, Sita Kakunoori, Lilla Zöllei, and Bruce Fischl 2010 Frontiers in Human Neuroscience. 2010 May 28; 4(42). p 1-13. DOI: 10.3389/fnhum.2010.000421985
Environmental Factors Surpass Genetic Influences in Determining Fiber Microstructure as the Brain Develops: Diffusion Tensor Imaging in 705 Twins Ming-Chang Chiang, Katie L. McMahon, Greig I. de Zubicaray, Nicholas G. Martin, Margaret J. Wright, Ian Hickie, Arthur W. Toga, Paul M. Thompson 2010 40th Annual Meeting of the Society for Neuroscience, San Diego, CA, November 13-17 (2010).
Fiber Demixing with the Tensor Distribution Function avoids errors in Fractional Anisotropy maps PDF Liang Zhan, Alex D. Leow, Neda Jahanshad, Arthur W. Toga, Thompson PM 2010 Organization for Human Brain Mapping, Barcelona, Spain
Generalized Q-Sampling Imaging Yeh F, Wedeen V, Tseng W 2010 IEEE Trans Med Imaging. 2010 Mar 18. PMID: 20304721
Genetic Influences on Brain Asymmetry: A DTI Study of 374 Twins and Siblings Neda Jahanshad, Agatha D. Lee, Marina Barysheva, Katie L. McMahon, Greig I. de Zubicaray, Nicholas G. Martin, Margaret J. Wright, Arthur W. Toga, Paul M. Thompson 2010 Neuroimage. 2010 Aug 15;52(2):455-69. Epub 2010 Apr 27. PMID: 20430102
Imaging Genomics Paul M. Thompson, Nicholas G. Martin and Margaret J. Wright 2010 Current Opinion in Neurology 2010 Aug;23(4):368-73. PMID: 20581684
Improved tractography alignment using combined volumetric and surface registration Lilla Zöllei, Allison Stevens, Kristen Huber, Sita Kakunoori and Bruce Fischl 2010 NeuroImage Volume 51, Issue 1, 15 May 2010, Pages 206-213 DOI: 10.1016/j.neuroimage.2010.01.101
Improved Tractography Alignment Using Combined Volumetric and Surface Registration Lilla Zöllei, Allison Stevens, Kristen Huber, Sita Kakunoori, and Bruce Fischl 2010 Neuroimage. 2010 May 15;51(1):206-13. Epub 2010 Feb 12. PMID: 20153833
In-vivo Investigation of the Human Cingulum Bundle Using the Optimization of MR Diffusion Spectrum Imaging Nezamzadeh M, Wedeen VJ, Wang R, Zhang Y, Zhan W, Young K, Meyerhoff DJ, Weiner MW, Schuff N 2010 Eur J Radiol. 2010 Jul;75(1):e29-36. Epub 2009 Jul 16. PMID: 19615838
LONI MiND: Metadata in NIfTI for DWI Vishal Patel, Ivo D. Dinov, John D. Van Horn, Paul M. Thompson, Arthur W. Toga 2010 Neuroimage. 2010 Jun;51(2):665-76. Epub 2010 Mar 3. PMID: 20206274
Mesh-Based Spherical Deconvolution: A Flexible Approach to Reconstruction of Non-Negative Fiber Orientation Distributions V. Patel, Y. Shi, P. M. Thompson, A. W. Toga 2010 NeuroImage, 51(3), pp. 1071-1081 PMCID: PMC2927199
Metric-Induced Optimal Embedding for Intrinsic 3D Shape Analysis R. Lai, Y. Shi, K. Scheibel, S. Fears, R. Woods, A. W. Toga, T.F.Chan 2010 CVPR DOI: 10.1109/CVPR.2010.5540023
MR Connectomics: Principles and Challenges Hagmann P, Cammoun L, Gigandet X, Gerhard S, Ellen Grant P, Wedeen V, Meuli R, Thiran JP, Honey CJ, Sporns O 2010 J Neurosci Methods. 2010 Jan 22. PMID: 20096730
Multivariate Variance-Components Analysis in DTI Agatha D. Lee, Natasha Leporé, Jan de Leeuw, Caroline C. Brun, Marina Barysheva, Katie L. McMahon, Greig I. de Zubicaray, Nicholas G. Martin, Margaret J. Wright, Paul M. Thompson 2010 2010 IEEE International Symposium on Biomedical Imaging From Nano to Macro (2010) DOI: 10.1109/ISBI.2010.5490199
Resolving Myoarchitectural Disarray in the Mouse Ventricular Wall with Diffusion Spectrum Magnetic Resonance Imaging Wang TT, Kwon HS, Dai G, Wang R, Mijailovich SM, Moss RL, So PT, Wedeen VJ, Gilbert RJ 2010 Ann Biomed Eng. 2010 Sep;38(9):2841-50. Epub 2010 May 12. PMID: 20461466
Robust Surface Reconstruction via Laplace-Beltrami Eigen-Projection and Boundary Deformation Y.Shi, R. Lai, J. Morra, I. Dinov, P. M. Thompson, A. W. Toga 2010 IEEE Trans. Medical Imaging, 29(12), pp. 2009-2022 DOI: 10.1109/TMI.2010.2057441
Scalar Connectivity Measures from Fast-Marching Tractography Reveal Heritability of White Matter Architecture Vishal Patel, Ming-Chang Chiang, Paul M. Thompson, Katie L. McMahon, Greig I. de Zubicaray, Nicholas G. Martin, Margaret J. Wright, Arthur W. Toga 2010 2010 IEEE International Symposium on Biomedical Imaging From Nano to Macro (2010) DOI: 10.1109/ISBI.2010.5490187
Tensor Distribution Function Demixes Fibers in Multi-Shell High Angular Resolution Diffusion Images Liang Zhan, Alex D. Leow, Iman Aganj, Christophe Lenglet, Guillermo Sapiro, Noam Harel, Arthur W. Toga, Paul M. Thompson 2010 Proc. 16th Annual Meeting of the Organization for Human Brain Mapping, Barcelona, June 6-10, 2010
The Human Connectome Project Bruce Rosen, Van J. Wedeen, John D. Van Horn, Bruce Fischl, Randy L. Buckner, Lawrence Wald, Matti Hamalainen, Steven Stufflebeam, Joshua Roffman, David W. Shattuck, Thompson PM, Roger P. Woods, Nelson Freimer, Robert Bilder, and Arthur W. Toga 2010 Organization for Human Brain Mapping, Barcelona, Spain; 2010
Theoretical Models Relating Angular and Spatial Resolution in HARDI PDF Liang Zhan, Neda Jahanshad, Daniel B. Ennis, Alex D. Leow, Matt A. Bernstein, Bret J. Borowski, Clifford R. Jack Jr, Arthur W. Toga, Thompson PM 2010 Organization for Human Brain Mapping, Barcelona, Spain
Trade-offs between Angular and Spatial Resolution in High Angular Resolution Diffusion Imaging (HARDI) PDF Liang Zhan, Neda Jahanshad, Alex D. Leow, Matt A. Bernstein, Bret J. Borowski, Clifford R. Jack Jr, Arthur W. Toga, Thompson PM 2010 Organization for Human Brain Mapping, Barcelona, Spain
Visualization of Image Data from Cells to Organisms Thomas Walter, David W Shattuck, Richard Baldock, Mark E Bastin, Anne E Carpenter, Suzanne Duce, Jan Ellenberg, Adam Fraser, Nicholas Hamilton, Steve Pieper, Mark A Ragan, Jurgen E Schneider, Pavel Tomancak, Jean-Karim Hériché 2010 Nat Methods. 2010 Mar;7(3 Suppl):S26-41. PMID: 20195255
Voxelwise Genome-wide Association of Diffusion Tensor Images Identifies Putative Novel Variants Influencing White Matter Integrity in 467 Related Young Adults D. P. Hibar, J. L. Stein, N. Jahanshad, K. L. McMahon, G. I. De Zubicaray, N. K. Hansell, N. G. Martin, M. J. Wright, A. W. Toga, P. M. Thompson 2010 40th Annual Meeting of the Society for Neuroscience, San Diego, CA, November 13-17 (2010)
White matter pathology isolates the hippocampal formation in Alzheimer’s disease D.H. Salat, D.S. Tuch, A.J.W. van der Kouwe, D.N. Greve, V. Pappu, S.Y. Lee, N.D. Hevelone, A.K. Zaleta, J.H. Growdonc, S. Corkin, B. Fischl, H.D. Rosas 2010 Neurobiology of Aging 31 (2010) 244–256 PMID: 18455835
A Diffusion Tensor Imaging Tractography Algorithm Based on Navier–Stokes Fluid Mechanics Nathan S. Hageman, Arthur W. Toga, Katherine L. Narr, David W. Shattuck 2009 IEEE Trans Med Imaging. 2009 Mar;28(3):348-60. PMID: 19244007
Active Fibers: Matching Deformable Tract Templates to Diffusion Tensor Images Ilya Eckstein, David W. Shattuck, Jason L. Stein, Katie L. McMahon, Greig de Zubicaray, Margaret J. Wright, Paul M. Thompson, Arthur W. Toga 2009 Neuroimage. 2009 Aug;47 Suppl 2:T82-9. Epub 2009 Feb 11. PMID: 19457360
Diffusion Spectrum Imaging Shows the Structural Basis of Functional Cerebellar Circuits in the Human Cerebellum in Vivo Granziera C, Schmahmann JD, Hadjikhani N, Meyer H, Meuli R, Wedeen V, Krueger G 2009 PLoS One. 2009;4(4):e5101. Epub 2009 Apr 2. PMID: 19340289
Diffusion-weighted Magnetic Resonance Imaging Reversal by Gene Knockdown of Matrix Metalloproteinase-9 Activities in Live Animal Brains Liu CH, You Z, Liu CM, Kim YR, Whalen MJ, Rosen BR, Liu PK 2009 J Neurosci. 2009 Mar 18;29(11):3508-17. PMID: 19295156
Genetics of Brain Fiber Architecture and Intellectual Performance Ming-Chang Chiang, Marina Barysheva, David W. Shattuck, Agatha D. Lee, Sarah K. Madsen, Christina Avedissian, Andrea D. Klunder, Arthur W. Toga, Katie L. McMahon, Greig I. de Zubicaray, Margaret J. Wright, Anuj Srivastava, Nikolay Balov, and Paul M. Thompson 2009 J Neurosci. 2009 Feb 18;29(7):2212-24. PMID: 19228974
Investigating the uncertainty in multi-fiber estimation in High Angular Resolution Diffusion Imaging Liang Zhan, Alex D. Leow, Marina Barysheva, Albert Feng, Arthur W. Toga, Guillermo Sapiro, Noam Harel, Kelvin O. Lim, Christophe Lenglet, Katie L. McMahon,Greig I. de Zubicaray, Margaret J. Wright, Paul M. Thompson 2009 12th International Conference on Medical Image Computing and Computer Assisted Intervention, London, UK, (256-267). 20 September 2009.
Mean Diffusivity: A Biomarker for CSF-related Disease and Genetic Liability Effects in Schizophrenia Katherine L. Narr, Nathan Hageman, Roger P. Woods, Liberty S. Hamilton, Kristi Clark, Owen Phillips, David W. Shattuck, Robert F. Asarnow, Arthur W. Toga, Keith H. Nuechterlein 2009 Psychiatry Res. 2009 Jan 30;171(1):20-32. Epub 2008 Dec 10. PMID: 19081707
Segmenting Crossing Fiber Geometries Using Fluid Mechanics Tensor Distribution Function Tractography Nathan Hageman, Alex Leow, David Shattuck, Liang Zhan, Paul Thompson, Siwei Zhu, Arthur Toga 2009 IEEE International Symposium on Biomedical Imaging (ISBI’09), Boston, June 2009 DOI: 10.1109/ISBI.2009.5193325
Visualization Tools for High Angular Resolution Diffusion Imaging David W. Shattuck, Ming-Chang Chiang, Marina Barysheva, Katie L. McMahon, Greig I. de Zubicaray, Matthew Meredith, Margaret J. Wright, Arthur W. Toga, Paul M. Thompson 2008 Medical Image Computing and Computer Assisted Intervention. 2008;11(Pt 2):298-305. PMID: 18982618